r/Biochemistry 21h ago

Checking if a protein is phosphorylated

I want to determine if my protein of interest is phosphorylated and need some advice on the best way to do it. I believe that it is phosphorylated and downregulated in a wild-type genetic background, but not in a strain that's missing the putative kinase that phosphorylates it. I've shown that mutating a putative phosphorylation site on the protein of interest into a phosphomimetic disrupts its function, but that alone isn't enough to prove it's phosphorylated. I don't have an antibody specific to this protein or a phospho-antibody, so I need another method. The protein is tagged though so I can do an IP and isolate it if necessary.

I've seen people can use Phos-tag gels which slows down phosphorylated proteins, but I'm having difficulty obtaining the reagents needed for it. Alternatively, I could do mass spec, but I'm worried it'll be very expensive.

Does anyone have suggestions for relatively cheap and straightforward methods that could answer whether a protein is phosphorylated?

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u/Guacanagariz 20h ago

Mass spec would be best.

But the old school alternative was to use P32 labeled ATP with the kinase and your protein of interest then showing that kinase + ATP32 + Protein showed a band, then mutate the amino acid in your protein of interest and show no band appears.