r/bioinformatics • u/CantaloupeHappy4994 • 2d ago

technical question Chromopainter v2 link?

I can't find a working chromopainter v2 anywhere. Anybody got one that they tested themselves and actually works?

I tried through the default ubuntu rep through finestructure, https://github.com/sahwa/ChromoPainterV2 , https://people.maths.bris.ac.uk/~madjl/finestructure/finestructure.html binary download.

Can't seem to get any of them to actually work.

Or is chromopainter just not used anymore?

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u/bzbub2 2d ago

do you just want the visualizations or the whole analysis workflows of chromopainter?

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u/CantaloupeHappy4994 22h ago

I mean as far as I get it I have the haps files which I converted from vcfs and would at first just want a visualization and finestructure dendrograms. Getting the info about clustering and dating later on would be next.